RnoEX0036398 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38660567-38661962:+
Coord C1 exon
chr3:38660567-38660801
Coord A exon
chr3:38661707-38661775
Coord C2 exon
chr3:38661882-38661962
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCAATTGGAATCCAGCAA
3' ss Score
1.99
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTGATTTGAAGACACTGCCAGTTGACTTTGTTGAATGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGACTCTACGAGCGAGAGAGGAAGCCCTTGGAGAACTTGTCAGATGAGGACCGCTTCATGATGCAGTTCAGTAAGATTGAGCGGCTCATGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTCACAGAGAGCATTCAGATGCTGACTCCT
Seq A exon
CAACTGCACGCAATCATAGCAGCATCTGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAAATTCTGGAG
Seq C2 exon
ATCATCTTGGCCCTTGGAAACTATATGAATAGCAGCAAACGAGGAGCAGTCTATGGATTCAAACTTCAGAGTTTAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567-'24-26,'24-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
PF0218118=FH2=FE(6.0=100)
C2:
PF0218118=FH2=FE(7.1=100)
Main Skipping Isoform:
ENSRNOT00000085545fB5621
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTCAGATGAGGACCGCT
R:
CTGCTCCTCGTTTGCTGCTAT
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]