HsaEX0026041 @ hg19
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153484813-153486419:+
Coord C1 exon
chr2:153484813-153485047
Coord A exon
chr2:153486170-153486238
Coord C2 exon
chr2:153486339-153486419
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGATTGGAATCTAGCAA
3' ss Score
2.75
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
ATTTGACTTGAAGACACTGCCTGTGGACTTTGTGGAATGCTTGATGCGGTTCCTACCAACTGAGAATGAAGTGAAAGTGCTTCGGCTCTACGAGCGGGAAAGGAAGCCTCTGGAAAACTTGTCAGATGAAGATCGGTTCATGATGCAGTTTAGTAAAATCGAGAGGCTCATGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTTGCTGAAAGCATTCAGATGCTGACTCCT
Seq A exon
CAACTACATGCGATTATAGCAGCATCTGTCTCTATAAAGTCGTCCCAAAAACTCAAGAAAATTCTGGAG
Seq C2 exon
ATCATCTTAGCCCTTGGAAACTACATGAATAGCAGTAAAAGAGGAGCAGTTTATGGATTTAAACTTCAGAGTTTAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
PF0218118=FH2=FE(6.0=100)
C2:
PF0218118=FH2=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACGAGCGGGAAAGGAAG
R:
TTCATGTAGTTTCCAAGGGCT
Band lengths:
179-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)