MmuEX6101341 @ mm10
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53116840-53118444:+
Coord C1 exon
chr2:53116840-53117074
Coord A exon
chr2:53118187-53118255
Coord C2 exon
chr2:53118364-53118444
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCATTGGAATCCAGCAA
3' ss Score
2.69
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
GTTTGACTTGAAGACGCTACCGGTTGACTTTGTTGAGTGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTATGAGCGAGAGAGGAAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTCATGATGCAGTTCAGTAAGATTGAGCGGCTGCTGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTCACAGAGAGCATTCAGATGCTGACTCCT
Seq A exon
CAACTTCACGCAATTATAGCAGCATCCGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGATTCTGGAG
Seq C2 exon
ATCATCTTGGCCCTTGGAAACTATATGAATAGCAGCAAACGAGGAGCAGTCTATGGATTTAAACTTCAGAGTTTAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-'44-40,'44-35,48-40=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
PF0218118=FH2=FE(6.0=100)
C2:
PF0218118=FH2=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTTGTCAGACGAGGACCG
R:
CTGCTCCTCGTTTGCTGCTAT
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types