GgaEX6043315 @ galGal3
Exon Skipping
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37165509-37166773:+
Coord C1 exon
chr7:37165509-37165743
Coord A exon
chr7:37166466-37166534
Coord C2 exon
chr7:37166693-37166773
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCCCTGTGTTTACTTGCAGCAA
3' ss Score
10.34
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
GTTTGACCTGAAAACGCTGCCTGTGGATTTTGTTGAGTGCCTCATGAGGTTCCTGCCCACCGAGAACGAGGTGAAGGTGCTGCGGCTCTACGAGCGGGAGAGGAAACCCATTGAGAACCTGTCTGATGAAGACCGGTTCATGATGCAGTTCAGCAAGATCGAGAGGCTGATGCAGAAGATGACCATTATGGCATTCATAGGCAACTTTGCTGAGAGCATCCAGATGCTGACCCCG
Seq A exon
CAACTTCATGCCATTATAGCTGCATCTGTCTCAATAAAGTCGTCTCAGAAGCTTAAGAAAATACTGGAG
Seq C2 exon
ATAATCTTGGCTCTTGGTAACTACATGAACAGCAGTAAGCGAGGAGCAGTGTATGGATTTAAGCTACAGAGTCTAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525-'25-22,'25-21,26-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
PF0218118=FH2=FE(6.0=100)
C2:
PF0218118=FH2=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACCGGTTCATGATGCA
R:
ATCCATACACTGCTCCTCGCT
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]