DreEX6035115 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8022608-8033270:+
Coord C1 exon
chr9:8022608-8022718
Coord A exon
chr9:8028058-8028123
Coord C2 exon
chr9:8033143-8033270
Length
66 bp
Sequences
Splice sites
3' ss Seq
GACCTTGATTTTTTTTTCAGACC
3' ss Score
8.87
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GTGAAACTGATGCCTCCTGCCCCTAATGATGACCTTGCATCTCTCAGTGAGCTCACAGACAGCAGCCTGCTCTACGAGATGCAGAAGCGCTTCGCCAATGACCAGATTTAT
Seq A exon
ACCTACATTGGACACATTCTTCTCCTCATAAACCCTTACAAGGACCTGCCCATCTACTCTAATCTT
Seq C2 exon
GTCAGTCAGTTGTATCTGAGCTCCAGTGGCCGTCTGTGTTCTTCTCTCCCTCCTCATATCTTCTCTTCAGCCGAACGAGCTTTTCACATGATGTTTCAGGAGCGACGGCCACAGTGTTTCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.8=75.7)
A:
PF0006316=Myosin_head=FE(2.9=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACGAGATGCAGAAGCG
R:
TGATGAAACACTGTGGCCGTC
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]