RnoEX6056272 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84827292-84835889:-
Coord C1 exon
chr16:84835779-84835889
Coord A exon
chr16:84829498-84829563
Coord C2 exon
chr16:84827292-84827419
Length
66 bp
Sequences
Splice sites
3' ss Seq
TATTTGTATCTTTTTGACAGACC
3' ss Score
7.21
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCCAGCTCACGCCTCCAGCTCCCAGTGATGACCTGGCCACACTCAGCGAGCTGAATGACAGCAGCCTGCTCTATGAAATCCAGAAGCGCTTCGGGAATGACCAGATACAC
Seq A exon
ACCTTCATCGGAGACATCTTTTTGCTCGTTAACCCTTTCAAAGAACTCCCAATTTACTCCACTGTG
Seq C2 exon
GTGTCCCAAATGTACCTGAGCCCCACAGGCCAGCGCAGCCCCTCACTGCCACCCCACCTCTTCTCCTGTGCAGAGAGAGCCTTCCACAGGCTGTTCCAGGAGCGAAGGCCACAGAACATCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.000 C2=0.116
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.8=75.7)
A:
PF0006316=Myosin_head=FE(2.9=100)
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCTCCCAGTGATGA
R:
TCTGCACAGGAGAAGAGGTGG
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]