BtaEX6057374 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88050429-88056394:+
Coord C1 exon
chr12:88050429-88050539
Coord A exon
chr12:88054425-88054490
Coord C2 exon
chr12:88056267-88056394
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTATCCTTTCAATTTAATAGACT
3' ss Score
6.22
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTCAAGCTGATGCCTCCCGCTCCCAATGATGACCTGGCGACGCTCAGCGAGCTCACAGACAGCAGCCTGCTTTATGAAATTCAGAAGCGCTTTGGGAACAATCAGATTTAC
Seq A exon
ACTTTTATTGGGGACATTCTCCTGCTGGTTAATCCATTCAAAGAGATTCCAATTTATTCCACCGTG
Seq C2 exon
GTCTCTGAGCTGTACCTGAGCAGCACTGGGCAACCCAACCCCTCCCTGCCGCCTCACATTTTCTGCTGTGCGGAGAGAGCCTTCCACCAGCTTTTCCAGGAGCGGAGACCTCAGTGTTTCGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.8=75.7)
A:
PF0006316=Myosin_head=FE(2.9=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAATGATGACCTGGCGAC
R:
CTCTCTCCGCACAGCAGAAAA
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]