GgaEX6005425 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137565627-137569630:+
Coord C1 exon
chr1:137565627-137565737
Coord A exon
chr1:137567390-137567455
Coord C2 exon
chr1:137569503-137569630
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTTTTTCTTCAGACC
3' ss Score
10.81
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATCAAGCTTATGCCTCCAGCTCCAAATGATGACTTGGCTTCTCTGAGTGAGCTAACAGACAGCAGCCTACTTTATGAGATTCAGAAGCGTTTCAATAATAATCAGATATAT
Seq A exon
ACCTACATTGGTGATAAATTGCTGCTTGTTAACCCATTTAAAGAACTTCCCATCTATTCCACCATG
Seq C2 exon
GTCACCCAGCTTTATTTAAGCAACTCTGGAAAACTGTGTTCCACACTTCCCCCTCATATATTTTCCTGTGCTGAAAGAGCTTACCACATGCTGTTCCAGGAGCAGCGTCCCCAGTGCTTTATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(3.8=75.7)
A:
PF0006316=Myosin_head=FE(2.9=100)
C2:
PF0006316=Myosin_head=FE(5.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCTTATGCCTCCAGCTC
R:
ATGAGGGGGAAGTGTGGAACA
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]