HsaEX6041038 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:108844343-108883186:+
Coord C1 exon
chr13:108844343-108844493
Coord A exon
chr13:108866177-108866242
Coord C2 exon
chr13:108883059-108883186
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTGCATCCCTTTTTTCACAGACA
3' ss Score
8.83
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
CAGTCCCCTGGTGTTACCAATTGCCAAGCAAGACAGTTTGTTGGAAAAAGACATTATGTTCAAAGATGCAACAAAAGGTCTGTGTAAGCAGCAGTCTCAGGACAGCATCCCTGAAAACCCCATGATGAGCGGTTCCACCAAACCCGAGCAG
Seq A exon
ACATTCATTGGAGACATTCTTTTGCTTGTTAACCCATACAAGGAGCTTCCAATTTATTCTTCCATG
Seq C2 exon
GTGTCCCAGCTGTATTTCAGCTCCTCAGGGAAGCTGTGTTCCTCGCTGCCTCCTCACCTCTTCTCCTGTGTGGAGAGAGCCTTTCACCAGCTCTTCCGGGAACAGCGGCCTCAGTGTTTCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515_MULTIEX3-3/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=FE(3.9=100)
C2:
PF0006316=Myosin_head=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCATCCCTGAAAACCCC
R:
GAGGATGAAACACTGAGGCCG
Band lengths:
177-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains