HsaEX6041039 @ hg38
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr13:108844343-108883186:+
Coord C1 exon
chr13:108844343-108844493
Coord A exon
chr13:108855443-108855553
Coord C2 exon
chr13:108883059-108883186
Length
111 bp
Sequences
Splice sites
3' ss Seq
TACTTTCGGTTCTTCCCCAGGTC
3' ss Score
9.68
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAGTCCCCTGGTGTTACCAATTGCCAAGCAAGACAGTTTGTTGGAAAAAGACATTATGTTCAAAGATGCAACAAAAGGTCTGTGTAAGCAGCAGTCTCAGGACAGCATCCCTGAAAACCCCATGATGAGCGGTTCCACCAAACCCGAGCAG
Seq A exon
GTCAAGCTAATGCCTCCTGCCCCAAACGATGACCTGGCAACGCTCAGCGAGCTCAATGATGGCAGCCTGCTCTATGAGATTCAGAAGCGCTTTGGGAACAATCAGATCTAT
Seq C2 exon
GTGTCCCAGCTGTATTTCAGCTCCTCAGGGAAGCTGTGTTCCTCGCTGCCTCCTCACCTCTTCTCCTGTGTGGAGAGAGCCTTTCACCAGCTCTTCCGGGAACAGCGGCCTCAGTGTTTCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515_MULTIEX3-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(5.2=75.7)
C2:
PF0006316=Myosin_head=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGCAAGACAGTTTGTTGG
R:
GAGGATGAAACACTGAGGCCG
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains