MmuEX6034276 @ mm10
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10384588-10396916:+
Coord C1 exon
chr8:10384588-10384738
Coord A exon
chr8:10390129-10390239
Coord C2 exon
chr8:10396851-10396916
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCCTTTGTCCCACCCCACAGGTC
3' ss Score
12.16
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AAGTCCCCTGGTGCTACCAATCGCCAAGCAGGACAGCTTACTGGAAAAAGACATTATGTTCAAAGACACAACGAAAGGTCTGTGCAAGCAGGAGTCCCAGGATGGCCCTCCTGAGACCAGCATGACAAGCAACTGCGGCAAGCCAGAGCAG
Seq A exon
GTCCAGGTCATGCCTCCAGCTCCCAGCGATGACCTAGCCACACTCAGTGAGCTTAATGACAGCAGCCTGCTGTATGAAATTCAGAAGCGCTTTGGAAATGACCAGATACAC
Seq C2 exon
ACCTTTATCGGAGACATCTTTTTGCTTGTTAACCCATTCAAAGAACTCCCAATTTACTCCACTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057-'5-18,'5-15,15-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.378 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(12.0=75.7)
C2:
PF0006316=Myosin_head=FE(2.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCCCCTGGTGCTACC
R:
AGTGGAGTAAATTGGGAGTTCTT
Band lengths:
214-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types