DmeEX6005794 @ dm6
Exon Skipping
Gene
FBgn0262029 | d
Description
The gene dachs is referred to in FlyBase by the symbol Dmeld (CG42840, FBgn0262029). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:8466817..8488671. Its molecular function is described by: motor activity; actin filament binding; protein binding; molecular adaptor activity. It is involved in the biological process described with 11 unique terms, many of which group under: imaginal disc-derived appendage morphogenesis; establishment or maintenance of cell polarity; vesicle cytoskeletal trafficking; negative regulation of biological process; post-embryonic development. 35 alleles are reported. The phenotypes of these alleles manifest in: visual system; peripheral nervous system; epidermal cell; prothoracic bristle; adult head sensillum. The phenotypic classes of alleles include: phenotype; increased mortality; fertile; some die during P-stage.
Coordinates
chr2L:8476806-8484153:+
Coord C1 exon
chr2L:8476806-8477023
Coord A exon
chr2L:8483130-8483416
Coord C2 exon
chr2L:8483566-8484153
Length
287 bp
Sequences
Splice sites
3' ss Seq
CTTTATCCGCTTTTCTTCAGATG
3' ss Score
9.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTCCACAACACCCTCACCAAAGCAAACGAAAACCTCAACTCCCATTGTGCAGTGCAAGTCCGCATCCCCGCCAGTAAAAGTGCAATCGGACTTAAAGGACTTCAAGTCGAACAGGACGAGCGCAGTGGTGGAAAGGTTCGCCAAATTCTCAGCCATTTACACGCTCCCAGTGCCCAAGAGGAAAAAGGCGTGCAACAAAACCACAGGAAATATTACAG
Seq A exon
ATGCATCTTCATCCAACGAGGCAGTTCATCTGCAGCAGCGGCTCAAAAGCCTGAGCACCGAATTGGTGACTCTGCGAAACCGCCTGCATGTGGGTCATGGACCGGGTCAGGGTCAGAGCCAGGGAAATGGCGCGCAGCCCGTCGCCCCAGCTCCCAATGCGGGTCCCAAGGCCAACAACTTTGACCTAAACGCATCCAGTCCGAATCTCAATCTGAGTTCCAGCGGCGCAGGACTTTCAGCCAGTGCAGTTCAGCAACACACCAATGGACATCACACGACATCGAAG
Seq C2 exon
AATCACAGCTTCAGCCACACATTGCCCGCAAACTCGGGCTCTGGTGGAGGAGGAGGCGCTGGAGGAGGCGCCGTTGTGTCGGCGAGGAACACGTCGATTCCACATCCACTTCCGCATCAGTTGGCCGAGAAGCCGGGCCTGTCGCATCAGCAGAGTGGCAGCGGACATGGTCAGTCCACCGGGACACTGCCACATATGAGCGGCATGGGAAGTATCCTGGGGCAAAATTCCCATTCCCATGCACCGGTCAACAACAACAGCAACAACTCCAACACGCTGCCCATGCGCACCTCCAACTCCGGACACCTGGGCATCAATGGCGGAGGCGTTGGCCACCATCTCAGCCACGCCCACAGCCAGCAATTGCCATTCATCCCGCAGTCGAAGCACACGAATCCCTGCCAGAGTGTGAAGACTCTGCCCTTTGGATTCGGATTCTCCGAAAGTCAGCAGAAGATGCAACAGCAGCAGCAACAGGGCAACTCCTCGCCCAAGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0262029-'4-7,'4-6,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.958 C2=0.883
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006316=Myosin_head=PU(4.2=15.8)
Main Inclusion Isoform:
FBpp0292925

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0292924
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCGTGCAACAAAACCAC
R:
GTTGTTGTTGACCGGTGCATG
Band lengths:
293-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)