GgaEX1037970 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137555350-137567455:+
Coord C1 exon
chr1:137555350-137555500
Coord A exon
chr1:137565627-137565737
Coord C2 exon
chr1:137567390-137567455
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGTAACTTCTATTTTCTAGATC
3' ss Score
8.28
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAACCCCTTGGCTTTACCGATTGCCAAGCAAGACAGTTTGCTGGAGAAAGACACCATGTTCAAGGATGCAGCTAAAGGTTTGTGTAAACAGCAGTCTCAAGACAGTGCATCTGAAAACGTCATGATGAACAGTACAGCCAAACTTGAACAG
Seq A exon
ATCAAGCTTATGCCTCCAGCTCCAAATGATGACTTGGCTTCTCTGAGTGAGCTAACAGACAGCAGCCTACTTTATGAGATTCAGAAGCGTTTCAATAATAATCAGATATAT
Seq C2 exon
ACCTACATTGGTGATAAATTGCTGCTTGTTAACCCATTTAAAGAACTTCCCATCTATTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(3.8=75.7)
C2:
PF0006316=Myosin_head=FE(2.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCTTTACCGATTGCCA
R:
TGGTGGAATAGATGGGAAGTTCT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]