HsaEX6041039 @ hg19
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109496691-109518590:+
Coord C1 exon
chr13:109496691-109496841
Coord A exon
chr13:109507791-109507901
Coord C2 exon
chr13:109518525-109518590
Length
111 bp
Sequences
Splice sites
3' ss Seq
TACTTTCGGTTCTTCCCCAGGTC
3' ss Score
9.68
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAGTCCCCTGGTGTTACCAATTGCCAAGCAAGACAGTTTGTTGGAAAAAGACATTATGTTCAAAGATGCAACAAAAGGTCTGTGTAAGCAGCAGTCTCAGGACAGCATCCCTGAAAACCCCATGATGAGCGGTTCCACCAAACCCGAGCAG
Seq A exon
GTCAAGCTAATGCCTCCTGCCCCAAACGATGACCTGGCAACGCTCAGCGAGCTCAATGATGGCAGCCTGCTCTATGAGATTCAGAAGCGCTTTGGGAACAATCAGATCTAT
Seq C2 exon
ACATTCATTGGAGACATTCTTTTGCTTGTTAACCCATACAAGGAGCTTCCAATTTATTCTTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'14-17,'14-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.243 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(5.2=75.7)
C2:
PF0006316=Myosin_head=FE(3.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTACCAATTGCCAAGCA
R:
TGGAAGAATAAATTGGAAGCTCCT
Band lengths:
206-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)