GgaEX1037970 @ galGal3
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142464602-142476706:+
Coord C1 exon
chr1:142464602-142464752
Coord A exon
chr1:142474878-142474988
Coord C2 exon
chr1:142476641-142476706
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGTAACTTCTATTTTCTAGATC
3' ss Score
8.28
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
CAACCCCTTGGCTTTACCGATTGCCAAGCAAGACAGTTTGCTGGAGAAAGACACCATGTTCAAGGATGCAGCTAAAGGTTTGTGTAAACAGCAGTCTCAAGACAGTGCATCTGAAAACGTCATGATGAACAGTACAGCCAAACTTGAACAG
Seq A exon
ATCAAGCTTATGCCTCCAGCTCCAAATGATGACTTGGCTTCTCTGAGTGAGCTAACAGACAGCAGCCTACTTTATGAGATTCAGAAGCGTTTCAATAATAATCAGATATAT
Seq C2 exon
ACCTACATTGGTGATAAATTGCTGCTTGTTAACCCATTTAAAGAACTTCCCATCTATTCCACCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(3.8=75.7)
C2:
PF0006316=Myosin_head=FE(2.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGCTTTACCGATTGCCA
R:
TGGTGGAATAGATGGGAAGTTCT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]