DreEX6035116 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8020464-8028123:+
Coord C1 exon
chr9:8020464-8020614
Coord A exon
chr9:8022608-8022718
Coord C2 exon
chr9:8028058-8028123
Length
111 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTTTTATGTTTCAGGTG
3' ss Score
10.99
5' ss Seq
TATGTACGT
5' ss Score
3.41
Exon sequences
Seq C1 exon
GGCTACCATGGCTCTGCCCATCTCCAGGAGGGACAGTTTGCTGGAGAAGGAGGCCATGTTTAGGGACTCTGGAGGTGCTCTGACACAGCAGGCTTCCCTTGATAACGGGCTGGATGGATCATATCCCAGCGCTGCAGGAAAACTGGAGCAG
Seq A exon
GTGAAACTGATGCCTCCTGCCCCTAATGATGACCTTGCATCTCTCAGTGAGCTCACAGACAGCAGCCTGCTCTACGAGATGCAGAAGCGCTTCGCCAATGACCAGATTTAT
Seq C2 exon
ACCTACATTGGACACATTCTTCTCCTCATAAACCCTTACAAGGACCTGCCCATCTACTCTAATCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(3.8=75.7)
C2:
PF0006316=Myosin_head=FE(2.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCCATCTCCAGGAGG
R:
TTAGAGTAGATGGGCAGGTCCT
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]