BtaEX6057375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88042561-88054490:+
Coord C1 exon
chr12:88042561-88042711
Coord A exon
chr12:88050429-88050539
Coord C2 exon
chr12:88054425-88054490
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTACCTGAATTTTCCTCAGGTC
3' ss Score
9.51
5' ss Seq
TACGTAAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CAGTCCCCTGGTATTGCCAATCGCCAAGCAAGACAGCCTGTTGGAAAAAGACATTATGTTCAAAGATGCAACAAAAGGTCTCTGCAAACGACAGTCTCAGGACAGCACAGTGGAGAACACCCCCATGCATGGCCCCGCCAAGCCTGAGCAG
Seq A exon
GTCAAGCTGATGCCTCCCGCTCCCAATGATGACCTGGCGACGCTCAGCGAGCTCACAGACAGCAGCCTGCTTTATGAAATTCAGAAGCGCTTTGGGAACAATCAGATTTAC
Seq C2 exon
ACTTTTATTGGGGACATTCTCCTGCTGGTTAATCCATTCAAAGAGATTCCAATTTATTCCACCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.297 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(3.8=75.7)
C2:
PF0006316=Myosin_head=FE(2.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCCTGGTATTGCCA
R:
CACGGTGGAATAAATTGGAATCTCT
Band lengths:
217-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]