MmuEX6034275 @ mm10
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10390129-10398722:+
Coord C1 exon
chr8:10390129-10390239
Coord A exon
chr8:10396851-10396916
Coord C2 exon
chr8:10398595-10398722
Length
66 bp
Sequences
Splice sites
3' ss Seq
TATTTGCATCTTTTTGACAGACC
3' ss Score
6.21
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTCCAGGTCATGCCTCCAGCTCCCAGCGATGACCTAGCCACACTCAGTGAGCTTAATGACAGCAGCCTGCTGTATGAAATTCAGAAGCGCTTTGGAAATGACCAGATACAC
Seq A exon
ACCTTTATCGGAGACATCTTTTTGCTTGTTAACCCATTCAAAGAACTCCCAATTTACTCCACTATG
Seq C2 exon
GTGTCCCAGATGTATCTGAGCCCCACAGGCCAGCGCAGCCCCTCACTGCCACCCCACCTCTTCTCCTGCGCAGAGAGAGCCTTCCACAGACTGTTCCAGGAGCGAAAGCCACAGAACATCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PU(12.0=75.7)
A:
PF0006316=Myosin_head=FE(2.9=100)
C2:
PF0006316=Myosin_head=FE(17.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTAATGACAGCAGCCTGC
R:
ATGTTCTGTGGCTTTCGCTCC
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types