DreEX6036553 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28143870-28156657:-
Coord C1 exon
chr9:28156500-28156657
Coord A exon
chr9:28155518-28155725
Coord C2 exon
chr9:28143870-28144247
Length
208 bp
Sequences
Splice sites
3' ss Seq
TATATTCAATCTCTGTTTAGTAC
3' ss Score
6.38
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATATTGTACTAAACTTCCGCACCACATTTGTGAGCACATCAGGCCAGGTGGTATATGATGCTCGCTCTATATGTGTGCATTACGTCACCACCTGGCTCTTTGTGGACCTGATTGCTGCGCTGCCATTTGACCTGTTGTATGCCTTCAATGTCAGTGTG
Seq A exon
TACTTCGGGGTTCATCTGTTGAAGACGGTCCGATTGTTACGGCTTCTACGCTTGCTACAAAAGCTGGAGCGCTACTCCCAATACAGTGCAGTAGTGCTCACATTACTCATGTCCATGTTTGCCTTGCTGGCACATTGGATGGCCTGTGTCTGGTACATCATTGGCCGCAGCGAGATAGAGAACAACAGCCCTGGTTCATGGGACATTG
Seq C2 exon
GCTGGTTGCATGAGCTGGGCAAACGTTTGGGCACTCCATACTTCCTGTCACCTCTCGCATCCCTCATTCCTGACTCTCTGCGCCCCACCATCCTGGACGGCCTGGTGGTTAATTCCAGCCAGTGGAACGGCTCTGATCTGGTGGCTCATGAGCCGGTGTGGAACTCCAGCCAGCTGAACTCCACAGGCACAGCGCCAGCGGCCCCTTCAAATGCTGGACAGACTGGAGCCGTACTGGGAGGAGGACCCTCCATCCGCAGCTCATATGTGACATCGCTGTACTTCGCTTTAAGCAGTCTGACCAGCGTGGGCTTTGGCAACGTCTCAGCCAATACCGACTCAGAGAAGATCTTCTCTATCTGCACCATGCTGATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(19.2=100)
A:
PF0052026=Ion_trans=FE(25.5=100)
C2:
PF0052026=Ion_trans=FE(46.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CATTACGTCACCACCTGGCTC
R:
TCTGTCCAGCATTTGAAGGGG
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]