MmuEX6056370 @ mm10
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99229059-99233004:+
Coord C1 exon
chr15:99229059-99229216
Coord A exon
chr15:99229306-99229513
Coord C2 exon
chr15:99232693-99233004
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTCCCCGGTCTTAGTAC
3' ss Score
7.1
5' ss Seq
TCGGTACTG
5' ss Score
4.52
Exon sequences
Seq C1 exon
ATATTGTGCTGAATTTTCGTACTACATTTGTGTCCAAGTCAGGCCAGGTGGTATTTGCCCCAAAGTCCATTTGCCTCCACTACGTCACCACCTGGTTCCTGCTGGATGTCATAGCAGCACTGCCCTTTGACCTACTACATGCCTTCAAGGTCAACGTG
Seq A exon
TACGTTGGGGCTCACCTCCTGAAGACCGTGCGACTGCTGCGCCTGCTGCGCCTGCTGCCAAGACTGGACCGGTACTCACAGTACAGCGCGGTTGTGCTCACCTTGCTCATGGCTGTCTTCGCCCTGCTCGCTCACTGGGTGGCCTGCGTCTGGTTTTACATCGGCCAGCAAGAGATTGAGAGCAGCGAGTCGGAGCTGCCTGAGATCG
Seq C2 exon
GCTGGCTGCAGGAGCTGGCACGCAGGCTGGAGACCCCCTACTACCTGGTGAGCCGGAGTCCAGATGGAGGGAACAGCTCTGGCCAGAGTGAAAACTGCAGCAGCAGCAGCAGCAGCAGTGGCAGCGGTGGCGGCAGAGGCAGCGAAGCCAATGGGACCGGGCTGGAGCTGCTGGGTGGCCCGTCCCTACGCAGCGCCTACATCACCTCCCTGTACTTCGCGCTCAGCAGTCTCACCAGTGTGGGCTTCGGCAACGTGTCCGCTAACACAGACACGGAGAAGATCTTCTCCATCTGCACCATGCTTATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'6-14,'6-8,16-14=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.210
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(20.9=100)
A:
PF0052026=Ion_trans=FE(27.7=100)
C2:
PF0052026=Ion_trans=FE(41.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCTCCACTACGTCACCA
R:
TACAGGGAGGTGATGTAGGCG
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types