MmuEX6056370 @ mm9
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99059490-99063235:+
Coord C1 exon
chr15:99059490-99059647
Coord A exon
chr15:99059737-99059944
Coord C2 exon
chr15:99063124-99063235
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTCCCCGGTCTTAGTAC
3' ss Score
7.1
5' ss Seq
TCGGTACTG
5' ss Score
4.52
Exon sequences
Seq C1 exon
ATATTGTGCTGAATTTTCGTACTACATTTGTGTCCAAGTCAGGCCAGGTGGTATTTGCCCCAAAGTCCATTTGCCTCCACTACGTCACCACCTGGTTCCTGCTGGATGTCATAGCAGCACTGCCCTTTGACCTACTACATGCCTTCAAGGTCAACGTG
Seq A exon
TACGTTGGGGCTCACCTCCTGAAGACCGTGCGACTGCTGCGCCTGCTGCGCCTGCTGCCAAGACTGGACCGGTACTCACAGTACAGCGCGGTTGTGCTCACCTTGCTCATGGCTGTCTTCGCCCTGCTCGCTCACTGGGTGGCCTGCGTCTGGTTTTACATCGGCCAGCAAGAGATTGAGAGCAGCGAGTCGGAGCTGCCTGAGATCG
Seq C2 exon
GCTGGCTGCAGGAGCTGGCACGCAGGCTGGAGACCCCCTACTACCTGGTGAGCCGGAGTCCAGATGGAGGGAACAGCTCTGGCCAGAGTGAAAACTGCAGCAGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(20.9=100)
A:
PF0052026=Ion_trans=FE(27.7=100)
C2:
PF0052026=Ion_trans=FE(41.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCTGAATTTTCGTACTACAT
R:
TGCTGCTGCAGTTTTCACTCT
Band lengths:
260-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: