DreEX6038656 @ danRer10
Exon Skipping
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50477895-50495200:+
Coord C1 exon
chr9:50477895-50478033
Coord A exon
chr9:50491699-50491933
Coord C2 exon
chr9:50495124-50495200
Length
235 bp
Sequences
Splice sites
3' ss Seq
CACTTGATCTTATTTTGCAGAGT
3' ss Score
9.24
5' ss Seq
AGAGTATGT
5' ss Score
5.66
Exon sequences
Seq C1 exon
AATCTGTCCTCTTTGAGTCGGGCCTCGTCCACAGAGTCGTCCTTCAAGAAATCGTCTACTAAGAGGAAAGCTCCTCCACCTCCGGTCATGATCAGCACAGACACTACACATCAAGACACAACAGACTCAAGCATGACAG
Seq A exon
AGTCAGCAGTGACGTCTCCACTGGAGGAGATCAAGGAGCAGGAGGAGATGAGTGTGGGTGCGGGGGTCAATGTGGAAGATGAAACCCTGGAGGACAACAGCAGTCTCAACATGTCTGCAAACATCTCTCTGGATTCGGGTCGTGCCGGGACAGCAACTCCCTCGCAGGATTCAGTGACTTTAGAAAGCGGGACGCCCAGAGACGATCCAGTATGTGACCTGTCCACTGATGCAGA
Seq C2 exon
AGTTGCTGAAGGCACAGTGAATGGAGAAATGAAAGCAGACCAGACCAGAAGTTCCCATATCACCTCAGAAGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829-'14-16,'14-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGTCCTCTTTGAGTCGGG
R:
ATCTTCTGAGGTGATATGGGAACT
Band lengths:
212-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]