GgaEX7006028 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19602002-19610328:+
Coord C1 exon
chr7:19602002-19602070
Coord A exon
chr7:19607551-19607809
Coord C2 exon
chr7:19610243-19610328
Length
259 bp
Sequences
Splice sites
3' ss Seq
CCTTCTCTTTGTGAGCTTAGGTG
3' ss Score
3.62
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAACAGAGTCAACACAATCAATCCCTACTGAAGTGGAAGGAAGAGCTGCCCAAATGCAGTCTGAAACAG
Seq A exon
GTGCAAGGACATCAGAATACAGTCTGGAAGAAATTGATGAAAAGGAAGAGATGAGTGTGCAAGAGGGAGAGGAAAGTGGAAGTACAGGTACCTCTCTCAGGACAGGAGAGGCTACTGCAGCCTTCAGCTCTATGGAGGTACCTCTGGAAACTGAAAGAAATGATTGTGCTTCATCAGTTCCTGTTCCTGGCACTGTTTCTGTAGACAACTCACAAAGCTTCAAGGAAGAAAAACAAGAAAATATGAGCACAGATGGCAA
Seq C2 exon
AGAACTACAGACTCAGATAAGCAGTGACCAAGCTGCATTTGAGAAAGACAGGAAGCTTAGAATTTTGGAAGAAAATAAAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'23-28,'23-27,26-28=AN
Average complexity
A_S
Mappability confidence:
90%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGTCAACACAATCAATCCCT
R:
TTCTTCCAAAATTCTAAGCTTCCTGT
Band lengths:
140-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]