MmuEX6101669 @ mm10
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:65102069-65105828:-
Coord C1 exon
chr2:65105715-65105828
Coord A exon
chr2:65103160-65103394
Coord C2 exon
chr2:65102069-65102166
Length
235 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGCATTTCTTTGTAGCTG
3' ss Score
9.07
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
AGGGCTCCCTTGGTCCCGGGTTCCTAAGCCAGGAGCAGTGTGCTGTGCCCAAGCCGCCGGATGAAATCTCTGAGGGCCCTGGAACTCCAGAGGCAGCTGTAGCATCCTTGACCT
Seq A exon
CTGGTGTAAGCTCTGATTACAGTCTTGAGGAGATAGATGAAAAGGAAGAACTCAGCGAGGCATCTAAAGATCCGGCTGGAAGTATTTCTGTGAAGTCGCCTGACATTGCTTCAGCATCGACTGATATGAGAATTACAGTGGAGAAGGATCCTGATTCAGCCCTCGGCATCAGTGATGGAGAGACCTCTCCAAGCTCCAAGGGAAAAACTCAAGAAGGCAGAAGCACAGAGGGGCA
Seq C2 exon
AGGGCCGTATCATCCTGTTGTAGGCCATATAGGCAATGAGGACAGAGTATCTGACAGTATAAAAGACATGAAGACACTGGGCCCAAACCAGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903-'42-32,'42-30,43-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGTCCCGGGTTCCTAAG
R:
ACTCTCCTGGTTTGGGCCC
Band lengths:
204-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types