HsaEX6016320 @ hg38
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr2:164699405-164704518:-
Coord C1 exon
chr2:164704444-164704518
Coord A exon
chr2:164700522-164700756
Coord C2 exon
chr2:164699405-164699499
Length
235 bp
Sequences
Splice sites
3' ss Seq
ATATCTGCATTTCTTTGTAGCTG
3' ss Score
8.05
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CCTTACAGCCAGTAGATGGAGTTCCTCCAGACAGTGCTTCAGAAGCAAACTCTCCTGAGGAGCTATCCAGCCCAG
Seq A exon
CTGGAATAAGCTCTGATTATAGCCTTGAAGAGATAGATGAAAAGGAAGAACTGAGTGAAGTGCCTAAAGTTGAAGCTGAAAATATTTCTCCGAAGTCACAAGATATTCCTTTTGTATCTACTGATATAATAAATACACTGAAAAATGATCCTGACTCAGCCCTTGGCAATGGTAGTGGAGAGTTCTCACAAAACTCCATGGAAGAAAAACAAGAAACTAAAAGCACAGATGGACA
Seq C2 exon
AGAACCACACAGTGTAGTATATGATACAAGCAATGGAAAGAAGGTAGTTGACAGTATAAGAAACTTGAAGTCGTTGGGCCCAAACCAAGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX3-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.890
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000629362fB1713
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCAGACAGTGCTTCAGA
R:
CATTCTCTTGGTTTGGGCCCA
Band lengths:
148-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains