DreEX6039388 @ danRer10
Exon Skipping
Gene
ENSDARG00000058593 | sri
Description
sorcin [Source:ZFIN;Acc:ZDB-GENE-040426-1356]
Coordinates
chr16:7331641-7333463:+
Coord C1 exon
chr16:7331641-7331709
Coord A exon
chr16:7333240-7333309
Coord C2 exon
chr16:7333420-7333463
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCAATTTGTTTTTCTTTAGGAT
3' ss Score
11.04
5' ss Seq
GACGTAAGA
5' ss Score
7.3
Exon sequences
Seq C1 exon
TATCCTGGTGGATTTCCTGGACAGCAGCAGGACCCTCTGTATGGATACTTCACTGCTATCGCTGGTCAA
Seq A exon
GATGGCCAAATATCTGCAGAAGAACTTCAGGCTTGTTTGACTCAAGCCAATTTCTCTGGTGGCTATAGAC
Seq C2 exon
CTTTCAACCTTGAGACATGTAGACTGATGATCAGCATGCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058593-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(39.7=100)
C2:
PF138331=EF-hand_8=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGATTTCCTGGACAGC
R:
TCATCAGTCTACATGTCTCAAGGT
Band lengths:
95-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]