HsaEX6008887 @ hg19
Exon Skipping
Gene
ENSG00000075142 | SRI
Description
sorcin [Source:HGNC Symbol;Acc:11292]
Coordinates
chr7:87840197-87848257:-
Coord C1 exon
chr7:87848174-87848257
Coord A exon
chr7:87846437-87846506
Coord C2 exon
chr7:87840197-87840240
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCTAATTTTTTTTCAAAAGGAT
3' ss Score
6.96
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TATGGAGGGGCTCCCGGAGGGCCTGCGTTTCCCGGACAAACTCAGGATCCGCTGTATGGTTACTTTGCTGCTGTAGCTGGACAG
Seq A exon
GATGGGCAGATAGATGCTGATGAATTGCAGAGATGTCTGACACAGTCTGGCATTGCTGGAGGATACAAAC
Seq C2 exon
CTTTTAACCTGGAGACTTGCCGGCTTATGGTTTCAATGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075142-'2-8,'2-6,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF111973=DUF2835=PU(25.0=32.1),PF134051=EF-hand_6=PU(29.0=32.1)
A:
PF111973=DUF2835=FE(63.9=100),PF134051=EF-hand_6=PD(64.5=83.3)
C2:
PF138331=EF-hand_8=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTTCCCGGACAAACTC
R:
CAGCATTGAAACCATAAGCCGG
Band lengths:
103-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)