MmuEX0044919 @ mm10
Exon Skipping
Gene
ENSMUSG00000003161 | Sri
Description
sorcin [Source:MGI Symbol;Acc:MGI:98419]
Coordinates
chr5:8057538-8062427:+
Coord C1 exon
chr5:8057538-8057621
Coord A exon
chr5:8059353-8059422
Coord C2 exon
chr5:8062384-8062427
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTATTTTTTTAAAGGAC
3' ss Score
9.3
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
TATGGTGGGGCTCCCGGAGGGCCTGCGTTCCCTGGACAAACTCAGGATCCGCTATATGGTTACTTTGCTGCTGTGGCTGGACAG
Seq A exon
GACGGACAAATTGATGCTGACGAATTGCAGAGATGCCTAACACAGTCTGGCATTGCGGGAGGATACAAGC
Seq C2 exon
CTTTTAACCTGGAGACTTGTCGCCTTATGGTTTCAATGTTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003161-'10-14,'10-9,14-14
Average complexity
S
Mappability confidence:
93%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PU(29.0=32.1)
A:
PF134051=EF-hand_6=PD(64.5=83.3)
C2:
PF138331=EF-hand_8=FE(24.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCCTGCGTTCCCTG
R:
TCCAACATTGAAACCATAAGGCGA
Band lengths:
111-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types