RnoEX6012536 @ rn6
Exon Skipping
Gene
ENSRNOG00000049780 | Sri
Description
sorcin [Source:RGD Symbol;Acc:1584485]
Coordinates
chr4:23012782-23018008:-
Coord C1 exon
chr4:23017925-23018008
Coord A exon
chr4:23016152-23016221
Coord C2 exon
chr4:23012782-23012825
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTCTTTTTTAAAGGAC
3' ss Score
10.06
5' ss Seq
AACGTAAGC
5' ss Score
7.35
Exon sequences
Seq C1 exon
TGTGGAGGGGCTCCTGGGGGGCCTGTGTTCCCTGGACACACTCAGGACCCGCTCTATGGTTACTTTGCTGCTGTGGCTGGACAG
Seq A exon
GACGGACAAATTGATGCTGACGAGTTGCAGCGATGCCTAACTCAGTCTGGCATAGCGGGAGGATACAAAC
Seq C2 exon
CTTTTAACCTGGAGACTTGTCGCCTTATGGTTTCAATGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049780-'5-7,'5-2,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(39.7=100)
C2:
PF138331=EF-hand_8=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCCTGTGTTCCCTG
R:
TCCAGCATTGAAACCATAAGGCG
Band lengths:
111-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]