GgaEX0013186 @ galGal4
Exon Skipping
Gene
ENSGALG00000008985 | SRI
Description
sorcin [Source:RefSeq peptide;Acc:NP_001074334]
Coordinates
chr2:20869131-20873424:-
Coord C1 exon
chr2:20873341-20873424
Coord A exon
chr2:20869814-20869883
Coord C2 exon
chr2:20869131-20869174
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACATCTTCTGTTATCGAAAGGAT
3' ss Score
5.67
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TATGGAGCAGCTCCAGGAGGCCCATCATTCCCTGGACAGGCTCAGGATCCTCTGTATGGTTATTTTGCTGCAGTAGCCGGACAG
Seq A exon
GATGGACAAATAGATGCTGATGAGCTACAGAGATGTCTCACCCAGTCAGGGATTGCAGGAGCCTATAAAC
Seq C2 exon
CTTTCAACTTGGAGACATGCAGACTCATGATCTCAATGCTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008985_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(40.4=100)
C2:
PF138331=EF-hand_8=FE(24.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGAGGCCCATCATTC
R:
GTCCAGCATTGAGATCATGAGTCT
Band lengths:
119-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]