BtaEX6027878 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010390 | SRI
Description
Bos taurus sorcin (SRI), mRNA. [Source:RefSeq mRNA;Acc:NM_001075350]
Coordinates
chr4:72778994-72786510:-
Coord C1 exon
chr4:72786427-72786510
Coord A exon
chr4:72784334-72784403
Coord C2 exon
chr4:72778994-72779037
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCCAAAAGGAT
3' ss Score
9.18
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TACGGAGGGGCTCCCGGAGGGCCTGCGTTTCCCGGGCAAACTCAGGATCCGCTGTATGGTTACTTTGCTGCTGTAGCTGGACAG
Seq A exon
GATGGACAAATAGATGCTGATGAACTGCAAAGATGCCTGACACAGTCGGGCATTGCTGGAGGATACAAAC
Seq C2 exon
CTTTTAACCTGGAGACTTGCCGGCTTATGGTTTCAATGCTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010390-'7-5,'7-2,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PU(0.1=0.0)
A:
PF138331=EF-hand_8=FE(39.7=100)
C2:
PF138331=EF-hand_8=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTTCCCGGGCAAA
R:
CAGCATTGAAACCATAAGCCGG
Band lengths:
103-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]