DreEX6040433 @ danRer10
Exon Skipping
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19563730-19566257:-
Coord C1 exon
chr16:19566158-19566257
Coord A exon
chr16:19565850-19566061
Coord C2 exon
chr16:19563730-19563963
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTTGTATATTTGTCATGCAGCTT
3' ss Score
6.25
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
CTACAAAATCCATGTGTTCAAAAAATGATGAGGATTCTGGAAATTATAGACAGCAGTTATTTCCCCTCATTCAAAGCTTTGATGGAAGCTGTTTTTGATG
Seq A exon
CTTTGCAGGAAGCTAGGGCTATAGACCTCCATCTTCAGCCTCTAGGATCTTTGCTGTCTAAATTGGAAAAATCGGAGTTTCCATCTTTCCCTGCTCTCATTCCACCAGTCTTTCATCTTATATTTCTGGTCTGGACTCACTGTTCATTCTATCGTTCACCAGCACGCATTGTTTCTCTGCTGCAGGAGCTCTGCAACTTCTTCATTCAGCAG
Seq C2 exon
GCCTCTTCACATCTCAGGGCAGATGAGCTGCTGAAATCAGAGACTGAAGATGCTTTGGAGAAAATACAGACTGTATTGGGAGTTTTTGGATGTGTCAGGGAAACATTTAAGACATACAGACAGAAAGTGGCTGCTTTGACCAATCATTATTCTTCAGCAAAGTGCTGGGATTTCCCTTCGGCTCTTGTTTTTACTCGATTTGATAGCATCTTGGCTCGTGTTTTACAGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.7=100)
A:
PF083857=DHC_N1=FE(12.0=100)
C2:
PF083857=DHC_N1=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATTCTGGAAATTATAGACAGCA
R:
ACACGAGCCAAGATGCTATCA
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]