DreEX6040566 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21601308-21612836:+
Coord C1 exon
chr16:21601308-21601434
Coord A exon
chr16:21611327-21611449
Coord C2 exon
chr16:21611552-21612836
Length
123 bp
Sequences
Splice sites
3' ss Seq
GGCGGTTTGTGTGTGCACAGGTT
3' ss Score
6.99
5' ss Seq
CCAGTATGA
5' ss Score
2.36
Exon sequences
Seq C1 exon
ATCCCATGCCTCCTGAATTTGAGCAGTACTACGGTTTTACAAAGTTTGCTATGGAGCTCAATGAGCTCGACCCTCTTACCAAACCACTTCTTCCACCCACAGACACCAGACTACGACCTGATCAGAG
Seq A exon
GTTACTAGAAGAAGGCAATGTTCAATCTGCAGAGGTGCAGAAGCAGAGGATTGAACAGCTCCAGCGAGAACGACGCAAAGTCTTGGAGGAAAACCACATGACACATCAACCTCGATTCTTCCA
Seq C2 exon
GAAGTCCAAAGATGAAACCTGGGTGAGCAACAACACCTACTGGGACTTACGGAAAGATCCAGGATTCTCTAACCTTGACTGTCCAGTCCTGTGGTAATGCAGAGCAAGCCAACGTGCATCAGTTCTGCCTGCTTTTATCTTTTCTGGTCAACATTACAGCTTCAAGAGACAGAACGCCCTTTATAGTGAGGTACAAGAGACTGATGGCCACAGACATACAGTCTGATCATTTCTTATTACTCTTTATTTATTGTCCCAGCAGTTCAGTTGCCTTAACATGCTTACGTTATGTTGTAGTTTCATTTATGCAAATGGATCCCTCGTATGTATGAGAAATATGCAATCTTGGCTGAGTAAAACGATTTAGATTTTGTTGATGTGCACAATACCGTAGCACAAGCAACCAACAACAACAACAAAAAACTGTTGGATTGTGGTCCCTTGTGGCTAAATGTAGAACTGCAGATGGCTGCAGCCCAAAACATTTTATTTTGTAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'24-25,'24-24,25-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=0.786 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
PF0123713=Oxysterol_BP=FE(11.8=100)
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCACAGACACCAGACTA
R:
TGTCTGTGGCCATCAGTCTCT
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]