GgaEX6019269 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31576264-31578625:-
Coord C1 exon
chr2:31578499-31578625
Coord A exon
chr2:31577815-31577937
Coord C2 exon
chr2:31576264-31576360
Length
123 bp
Sequences
Splice sites
3' ss Seq
TATCACTGCTGGTGCTACAGGTT
3' ss Score
5.96
5' ss Seq
CAGGTATTA
5' ss Score
7.26
Exon sequences
Seq C1 exon
ATCCAATGCCTAAAGATTATGAACAGTGGTATGGATTTACTCAGTTCGCATTGGAGTTAAATGAACTGGACCTGCAAACGAGGTCATTGCTCCCATCCACCGACACACGCTTTAGACCAGACCAAAG
Seq A exon
GTTTCTTGAAGAAGGAAATATTGAAGCAGCTGAAATGCAAAAACAGAGAATTGAGCAGCTACAGAGAGAACGACGGAAGGTGCTGGAAGAAAACAATCTAGAGCATCAGCCTAGATTTTTCAG
Seq C2 exon
GAAATCCAAAGATGACTCCTGGGTGAGCAATGGAACCTACATGGACCTTAGAAGAGAACCGGGTTTTTCCAAACTGGACAATCCTGTGCTCTGGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'27-40,'27-38,28-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.274 C2=0.094
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
PF0123713=Oxysterol_BP=FE(11.8=100)
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTAAAGATTATGAACAGTGGT
R:
CACCAGAGCACAGGATTGTCC
Band lengths:
218-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]