HsaEX6007532 @ hg38
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24796539-24806902:-
Coord C1 exon
chr7:24806776-24806902
Coord A exon
chr7:24804315-24804437
Coord C2 exon
chr7:24796539-24800279
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTCGATGCCTCAGGTT
3' ss Score
8.23
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ATCCTATGCCGAAAGGCTACGAGCAATACTATAGCTTCACACAGTTTGCGCTGGAATTAAATGAAATGGATCCATCATCAAAGTCTTTATTGCCACCTACTGACACTCGATTTAGGCCAGACCAGAG
Seq A exon
GTTTCTAGAGGAAGGGAACTTAGAAGAAGCTGAAATACAAAAGCAGAGGATTGAACAACTGCAGAGAGAAAGGCGGCGGGTCTTAGAAGAAAATCATGTGGAGCACCAGCCTCGGTTTTTCAG
Seq C2 exon
GAAATCCGACGATGACTCTTGGGTGAGCAACGGCACCTATTTGGAACTTAGAAAAGATCTTGGTTTTTCCAAACTGGACCATCCTGTCTTATGGTGAAAAAGTAAAGAAGAAAGATAACATTAGTGTATTTCTCCTGTGCTTGCCTTCTGAAGTGGCACAAACCTGTGTTTATATATTTAAAAGATACTCTAGGATGATCACTTGTGCTTAGCTTAGCATTGTAACTCTTTAAGTCTATATTTTCCTCAGTGCGTTTCTTTACAATTTCAAATGTTACCCTGATTGTTTATATGAATGTAGAACACCTTGACATTTCTTTTTATATATAAACTATTTAATAAAAATGAAAGATTGAATGTTCATGTGTGGGTTAAAAAAAGAAGCTTTAACACTAATTTTCCAAAGGTTAGGGAAGATTCCAATTAAATTTATGCCTTATAAAATTATGTTGTAGAAAAAAAATCAACCTCTCCCAGGTGCATTAAGAAATAAGAATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-'67-64,'67-61,69-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
PF0123713=Oxysterol_BP=FE(11.8=100)
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACAGTTTGCGCTGGAAT
R:
CCACTTCAGAAGGCAAGCACA
Band lengths:
247-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains