MmuEX6004359 @ mm10
Exon Skipping
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50293330-50301050:-
Coord C1 exon
chr6:50300924-50301050
Coord A exon
chr6:50299316-50299438
Coord C2 exon
chr6:50293330-50297161
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCCCTCAATCCCCAGGCT
3' ss Score
9.86
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATCCCATGCCGAAAGGCTATGAGCAGTATTATGGCTTCACACAGTTTGCACTAGAGTTAAATGAAATGGATCCTTTGTCAAGGTCTTTATTACCACCCACCGACACTCGGTTTAGACCAGATCAAAG
Seq A exon
GCTTCTAGAGGAAGGGAACATAGAGGAGGCTGAGGTTCAGAAGCAGAGGATCGAGAAGCTGCAGAGAGAGCGGCGGAGGGTCTTGGAGGAGAACGGTGTGGAGCACCAGCCCCGGTTTTTCAG
Seq C2 exon
GAAATCCAGTGACGATGCTTGGGTAAGCAATGGGACCTACCTGGAACTGAGGAAAGACCTTGGCTTTTCCAAGTTGGACCATCCCGTCTTATGGTGAAATGTAAAAGAGAAGGAGATTTCCTGTAACTTTGCCCACATTTGCTTCCGGAAGCAGCGCACAGCTGTCTGTATGTTTAAAAGATAGCATCTAGAATGATCACTTGTGCTTAGCGTAGCATTGTAAGCGCTGAAGTATATATTTTCTTCAGTAAGTCTCTTTAAAATTTCAAGTGTTATCATGATTGTTTATATGAATGTAGAACACCTCGGTATTTCTTTTTATATATATAAACTATTTAATAAAAATGAAAGATTGAATGTTAATGTGTGGGTTACAAAAAAAAAAACATTTAACACTAATTTTCCAGAGGTAAGGGGGAAATTTCAAATTTATGCCTTATAAAATCACACTGGAAAAAAATTGTCCCAGATGCGTTAAGAAATAATAACACCCAGGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822-'60-55,'60-54,62-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
PF0123713=Oxysterol_BP=FE(11.8=100)
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCACACAGTTTGCACT
R:
CGGAAGCAAATGTGGGCAAAG
Band lengths:
243-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types