RnoEX6013594 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80025440-80033847:-
Coord C1 exon
chr4:80033721-80033847
Coord A exon
chr4:80031721-80031843
Coord C2 exon
chr4:80025440-80029566
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCCTCTTTCCCAAGGCT
3' ss Score
8.38
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ATCCCATGCCGAAAGGCTATGAGCAGTATTATGGCTTCACACAGTTTGCATTAGAGTTAAATGAAATGGATCCTTTGTCAAGGTCTTTATTACCACCCACCGACACTCGTTTTAGACCAGATCAAAG
Seq A exon
GCTTCTAGAAGAAGGAAACATAGAGGAGGCTGAGGTGCAGAAGCAGAGGATTGAGAAGCTGCAGAGGGAGAGGCGGAGGGTCCTGGAGGAAAACGGTGTGGAGCACCAGCCCCGGTTTTTCAG
Seq C2 exon
GAAATCCAGTGACGATGCTTGGGTGAGCAACGGGACCTATCTGGAACTGAGGAAAGACCTTGGCTTTTCCAAGCTGGACCATCCCGTCTTGTGGTGAAATGTAAGGGAGAGAGAGAATCCCTGCACTTTGCCCACAGTTGCTTCCGGAAGCAACACACACCTGTCTGTACGTTTAAACGATAGCAGCCAGAACGATCCCTTGTGCTTAGCGTAGCATCGTAAGCACTGAAGTATATACTTTTCTTCAGTAAGTCTCTTTACAGTTTCAAGTGTTATCACGATCGTTTATATGAATGTAGAACGCCTCGGTATTTCTTTTTATATATAAACTATTTAATAAAAATGAAAGGTTGAATGTTAATGTGTGGGTTACAAAAAAAAAAAAAAACCATTTAACACTAATTTTCCAAAGGTAAGGGGGAAAATTCAGATTTATGCCTTATAAAATCACACTGGAAAAACAAAATTTCCCAGGTGTGCTAAGAAATAATAACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'35-40,'35-39,36-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.1=100)
A:
PF0123713=Oxysterol_BP=FE(11.8=100)
C2:
PF0123713=Oxysterol_BP=PD(4.6=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACCGACACTCGTTTTA
R:
CGCTAAGCACAAGGGATCGTT
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]