DreEX6040569 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21576190-21578332:+
Coord C1 exon
chr16:21576190-21576327
Coord A exon
chr16:21578095-21578158
Coord C2 exon
chr16:21578254-21578332
Length
64 bp
Sequences
Splice sites
3' ss Seq
TCTTTGCTTTTGTCCTCCAGGTC
3' ss Score
11.87
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTTTATATTGCTACATTCGCCGTGTCTGGCTATGCTTCCAGTTATTACAGAGCAGGAGGAAAACCGTTTAATCCAGTGTTGGGTGAAACCTATGAGTGTGATCGTCCTGACAAAGGCTTTCGTTTTGTCGCTGAGCAG
Seq A exon
GTCAGCCATCACCCCCCCATATCATCATGTCATGCCGAATCTAAAAACTTCATCTTTTGGCAAG
Seq C2 exon
ACGTGAGGTGGAGGAATAAGTTCTGGGGAAAGTCCATGGAGATTGTACCTGTAGGATCCTCTCATGTGGTTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
PF0123713=Oxysterol_BP=FE(6.1=100)
C2:
PF0123713=Oxysterol_BP=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGGAGGAAAACCGTT
R:
TCTCCATGGACTTTCCCCAGA
Band lengths:
133-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]