GgaEX0016510 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31786094-31791431:-
Coord C1 exon
chr2:31791294-31791431
Coord A exon
chr2:31788524-31788587
Coord C2 exon
chr2:31786094-31786172
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTTTCATGTCTTGCTATTAGGTC
3' ss Score
8.88
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GTATATATAGCTGCATTTGCAGTATCTGCGTATGCATCCAGTTACTACCGAGCTGGAAGTAAGCCATTTAACCCCGTTCTTGGAGAAACCTATGAATGTATTCGTGAAGATAAGGGTTTCCAGTTCTTTGCAGAACAG
Seq A exon
GTCAGTCACCATCCACCTATTTCTGCATGCCATGCTGAATCTGTGAATTTTGCTTTTTGGCAAG
Seq C2 exon
ATGTAAGATGGAAAAACAAATTCTGGGGAAAGTCCATGGAAATCGTTCCAGTTGGTACAACACACGTAACTCTTCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
PF0123713=Oxysterol_BP=FE(6.1=100)
C2:
PF0123713=Oxysterol_BP=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGAGCTGGAAGTAAGCCA
R:
ACGATTTCCATGGACTTTCCCC
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]