MmuEX1019248 @ mm10
Exon Skipping
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50309313-50320174:-
Coord C1 exon
chr6:50320037-50320174
Coord A exon
chr6:50312632-50312695
Coord C2 exon
chr6:50309313-50309391
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTGTCTCCTTCAGGTC
3' ss Score
12.38
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTGTACGTAGCAGCCTTCGCCATCTCCGCATATGCATCCAGCTACTTCCGAGCAGGCAGCAAGCCGTTTAACCCGGTCCTTGGAGAAACGTACGAATGCATCCGACAGGACAAGGGTTTCCAGTTTTTTGCCGAGCAG
Seq A exon
GTCAGCCACCACCCACCTATCTCCGCCTGCCACGCTGAGTCCGGAAACTTTGTTTTCTGGCAAG
Seq C2 exon
ATGTGAGATGGAAAAATAAATTCTGGGGTAAATCCATGGAAATTGTCCCGATTGGCACAACCCACGTGACTCTGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
PF0123713=Oxysterol_BP=FE(6.1=100)
C2:
PF0123713=Oxysterol_BP=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTTGGAGAAACGTACG
R:
TCACGTGGGTTGTGCCAATC
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types