HsaEX0044908 @ hg38
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24815059-24830905:-
Coord C1 exon
chr7:24830768-24830905
Coord A exon
chr7:24820175-24820238
Coord C2 exon
chr7:24815059-24815203
Length
64 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTGTTTCCATCAGGTC
3' ss Score
11.27
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTATATGTGGCAGCCTTTGCCATATCAGCGTATGCATCTAGCTACTACCGAGCTGGAAGCAAGCCATTTAATCCGGTTCTTGGAGAAACATATGAATGTATTCGGGAGGACAAGGGCTTCCAGTTTTTTTCAGAACAG
Seq A exon
GTCAGCCACCATCCGCCTATCTCTGCGTGTCATGCTGAGTCTAGAAATTTTGTTTTCTGGCAAG
Seq C2 exon
TTTTGGGGATCATTTTGAGTGGAACAAAGTGACCTCTTGCATCCATAACATCTTAAGCGGGCAGAGGTGGATTGAGCACTATGGAGAGATTGTCATCAAGAACCTGCATGATGATTCCTGCTACTGCAAAGTGAATTTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_MULTIEX1-16/21=15-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
PF0123713=Oxysterol_BP=FE(6.1=100)
C2:
PF0123713=Oxysterol_BP=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACTACCGAGCTGGAAGC
R:
TGCAAGAGGTCACTTTGTTCCA
Band lengths:
140-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development