RnoEX0062504 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80041731-80052521:-
Coord C1 exon
chr4:80052384-80052521
Coord A exon
chr4:80045075-80045138
Coord C2 exon
chr4:80041731-80041809
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTGTTTCCATCAGGTC
3' ss Score
9.95
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTATACGTGGCAGCCTTCGCCATCTCTGCATATGCATCCAGCTACTTCCGGGCAGGCAGCAAGCCATTTAACCCGGTCCTTGGAGAAACGTACGAATGCATCCGACAGGACAAGGGTTTCCAGTTTTTTGCCGAGCAG
Seq A exon
GTCAGCCACCACCCGCCTATCTCCGCCTGCCACGCCGAGTCCCGGAACTTTGTTTTCTGGCAAG
Seq C2 exon
ACGTGAGATGGAAAAACAAATTCTGGGGTAAATCCATGGAAATTGTCCCGATTGGTACTACCCATGTGACTCTGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'25-33,'25-32,26-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.0=100)
A:
PF0123713=Oxysterol_BP=FE(13.3=100)
C2:
PF0123713=Oxysterol_BP=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCTTGGAGAAACGTACG
R:
AGGCAGAGTCACATGGGTAGT
Band lengths:
142-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]