DreEX6042861 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47847834-47895068:-
Coord C1 exon
chr16:47894874-47895068
Coord A exon
chr16:47877269-47877385
Coord C2 exon
chr16:47847834-47847947
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTTTGGTGTCTTATCTCCAGCTC
3' ss Score
8.55
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
CTAAACTGCGTGAGGCCTGTTTTGACCCGGGCAGCGTGATGAATGGCACGCGGTTGGGTGGAGACTATAAGCTGGGCTCCACTGTGACCTTCCACTGTGATCCAGGCTACCAGCTACAGGGATATTCCAGCCTCACCTGCGTCATGGGCGCCACCAACAGGCCTGAGTGGAACAGAGCTCTGCCCAGCTGCCAAG
Seq A exon
CTCCATGTGGAAGCCGCTCGACAGGTTCGGAGGGCACCATTCTTTCCCCAAACTACCCTCGCAACTACACTACCGGCCAGTCCTGCGTCTATGAGATTTCAGTTCCTGGAGAGTTTG
Seq C2 exon
TTCTCTTTGGCCAGTTTATGTTCTTCCAGACGACCTCTAATGATGTGGTGGAGATCTTTGACGGGGCGTCCACCGAGTCTGCGCTCCTCTCCTCCACTTACGGCTCACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.026
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(34.9=92.5)
C2:
PF0043115=CUB=FE(35.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGCTGGGCTCCACTGTGA
R:
TGAGTGTGAGCCGTAAGTGGA
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]