GgaEX6022118 @ galGal3
Exon Skipping
Gene
ENSGALG00000016111 | CSMD3
Description
NA
Coordinates
chr2:139092193-139120036:-
Coord C1 exon
chr2:139119842-139120036
Coord A exon
chr2:139102243-139102359
Coord C2 exon
chr2:139092193-139092306
Length
117 bp
Sequences
Splice sites
3' ss Seq
TACTTATCTTCAATTTCTAGCAC
3' ss Score
7.19
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAAAGCTACGTGAATCTTGCTTTGATCCTGGAAATATAATGAATGGAACAAGACTTGGAATGGACTATAAACTAGGATCAACTGTAACATATTACTGTGATGCTGGTTATGTTTTGCAAGGATATTTTACACTAACTTGCATCATGGGAGATGATGGAAGACCTGGGTGGAACAGGGCTCTACCCAGTTGTCATG
Seq A exon
CACCCTGTGGAAGTCGGTCAACAGGCTCTGAAGGAACTGTATTATCACCGAACTACCCCAAGAATTACAGTGTTGGTCACAGCTGTGTTTACTCTATCACTGTTCCTAAGGAATTTG
Seq C2 exon
TGGTTTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCATGATGTGGTTGAAGTATACGATGGCCCAACTCTGCAGTCATCTTTGTTATCTTCTCTCTCAGGATCTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016111-'31-32,'31-31,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(34.6=92.5)
C2:
PF0043115=CUB=FE(35.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAATCTTGCTTTGATCCTGG
R:
GGGCCATCGTATACTTCAACCA
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]