MmuEX6053512 @ mm10
Exon Skipping
Gene
ENSMUSG00000022311 | Csmd3
Description
CUB and Sushi multiple domains 3 [Source:MGI Symbol;Acc:MGI:2386403]
Coordinates
chr15:47755968-47838602:-
Coord C1 exon
chr15:47838408-47838602
Coord A exon
chr15:47820352-47820468
Coord C2 exon
chr15:47755968-47756081
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTATAATTTTTACTCAACAGCAC
3' ss Score
6.8
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAAAACTCCGGGAGTCCTGCTTTGATCCAGGAAATATAATGAATGGTACCAGACTTGGAATGGATTATAAATTGGGGTCAACAGTCACCTATTACTGTGATGCTGGCTATGTTCTCCAAGGTTATTCAACACTCACTTGTATCATGGGAGATGATGGAAGGCCTGGATGGAATAGAGTCCTACCAAGTTGTCATG
Seq A exon
CACCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAAACTACCCCAAAAATTACAGTGTGGACCACAATTGTGTTTATTCTATAGCAGTTCCCAAGGAGTTTG
Seq C2 exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTTATCTTCCCTCTCGGGATCCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022311-'79-47,'79-46,80-47
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.051
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(34.9=92.5)
C2:
PF0043115=CUB=FE(35.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCCTGCTTTGATCCAG
R:
GGCCCATCAAACACCTCAACA
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types