RnoEX0003315 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86871193-86973716:-
Coord C1 exon
chr7:86973522-86973716
Coord A exon
chr7:86947614-86947730
Coord C2 exon
chr7:86871193-86871306
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTTTATTCAACAGCAC
3' ss Score
8.36
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAAAACTCCGGGAGTCCTGCTTTGATCCAGGCAATATAATGAATGGTACCAGACTTGGAATGGATTATAAATTGGGGTCAACAGTTACCTATTACTGTGATGCTGGCTATGTTCTCCAAGGTTATTCAACACTCACGTGTATCATGGGAGACGATGGAAGACCTGGATGGAATAGAGTCCTACCAAGTTGTCATG
Seq A exon
CACCCTGTGGAAGCCGTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAAACTACCCCAAAAATTACAGTGTGGACCATAATTGCGTTTATTCTATAGCCGTTCCCAAGGAGTTTG
Seq C2 exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTTATCTTCCCTCTCGGGATCCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'33-42,'33-39,34-42
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTGCTTTGATCCAGGC
R:
GGCCCATCAAACACCTCAACA
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]