RnoEX0003316 @ rn6
Exon Skipping
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86870609-86947730:-
Coord C1 exon
chr7:86947614-86947730
Coord A exon
chr7:86871193-86871306
Coord C2 exon
chr7:86870609-86870704
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCTGGTTCCTGTTGCTCAGTGG
3' ss Score
4.27
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CACCCTGTGGAAGCCGTTCAACAGGTTCAGAAGGCACAGTGCTATCACCAAACTACCCCAAAAATTACAGTGTGGACCATAATTGCGTTTATTCTATAGCCGTTCCCAAGGAGTTTG
Seq A exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTTATCTTCCCTCTCGGGATCCCATTCAG
Seq C2 exon
GAGAGTCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTCACTTCAGTTGGACCCATAACAGCTAAGGGATTTCACTTTGTTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937-'34-43,'34-42,35-43
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGTGGAAGCCGTTCAA
R:
TGATAAACAAAGTGAAATCCCTTAGC
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]