HsaEX6081993 @ hg38
Exon Skipping
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112408318-112472707:-
Coord C1 exon
chr8:112472591-112472707
Coord A exon
chr8:112408919-112409032
Coord C2 exon
chr8:112408318-112408413
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCGGGTTCCTGTTGATCAGTGG
3' ss Score
3.28
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CGCCCTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACTGTTCTATCACCAAACTATCCAAAAAATTACAGTGTGGGACATAATTGTGTTTATTCTATAGCAGTTCCAAAGGAGTTTG
Seq A exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTATGATGGGCCAACTCAGCAATCTTCTCTGTTATCTTCCCTCTCAGGATCCCATTCAG
Seq C2 exon
GAGAATCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTTACTTCAGTTGGACCAATAACAGCTAAGGGATTTCACTTTGTTTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796-'60-68,'60-66,66-68
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.9=92.5)
A:
PF0043115=CUB=FE(35.8=100)
C2:
PF0043115=CUB=PD(28.3=90.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGTGGAAGTCGTTCAAC
R:
TGGTAAACAAAGTGAAATCCCTTAGC
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains