DreEX6042862 @ danRer10
Exon Skipping
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47845365-47877385:-
Coord C1 exon
chr16:47877269-47877385
Coord A exon
chr16:47847834-47847947
Coord C2 exon
chr16:47845365-47845460
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGTCTCTCACTCCAGTTC
3' ss Score
10.99
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCCATGTGGAAGCCGCTCGACAGGTTCGGAGGGCACCATTCTTTCCCCAAACTACCCTCGCAACTACACTACCGGCCAGTCCTGCGTCTATGAGATTTCAGTTCCTGGAGAGTTTG
Seq A exon
TTCTCTTTGGCCAGTTTATGTTCTTCCAGACGACCTCTAATGATGTGGTGGAGATCTTTGACGGGGCGTCCACCGAGTCTGCGCTCCTCTCCTCCACTTACGGCTCACACTCAG
Seq C2 exon
GAGAGCCGTTGCCGCTGAGCTCTGCCAATGAAATCACCATCAGGTTCAAAACAGAAGGACCCAACACAGCTAAAGGCTTTCATTTTGTGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905-'33-34,'33-33,34-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.9=92.5)
A:
PF0043115=CUB=FE(35.8=100)
C2:
PF0043115=CUB=PD(28.3=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGTGGAAGCCGCTC
R:
CTTGGTACACAAAATGAAAGCCT
Band lengths:
213-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]