BtaEX6062833 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038281 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr14:54129440-54228757:+
Coord C1 exon
chr14:54129440-54129556
Coord A exon
chr14:54226278-54226391
Coord C2 exon
chr14:54228554-54228757
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCCTGGTTCCTGTTGATCAGTGG
3' ss Score
3.75
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CACCGTGTGGAAGTCGTTCAACAGGTTCAGAAGGCACTGTTCTATCACCAAACTATCCAAAAAATTACAGTGTGGGACATAATTGTGTTTATTCTATAGCAGTTCCCAAGGAGTTTG
Seq A exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTATGATGGGCCAACTCAGCAATCTTCTCTGTTATCTTCCCTCTCAGGATCCCATTCAG
Seq C2 exon
CTGTTCCTAGAACAAGTTCCACACAATGCAGTTCTGTACCTGAACCAAGGTTTGGAAGAAGGATTGGCAATGAATTTGCAGTTGGTTCATTGGTTCTTTTTGAATGTAACCCAGGATATATTCTCCATGGATCCATTGCAATTAGGTGTGATACAGTGCCGAATTCTTTGGCCCAATGGAATGATTCCTTACCTACCTGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038281-'27-31,'27-28,28-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(34.6=92.5)
A:
PF0043115=CUB=FE(35.5=100)
C2:
PF0008415=Sushi=WD(100=91.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTGGAAGTCGTTCAACA
R:
TTGCAATGGATCCATGGAGAA
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]